Negida Research Academy/Neuroimaging analysis of MRI using MATLAB - Arabic

  • $299 or 3 monthly payments of $100

Neuroimaging analysis of MRI using MATLAB - Arabic

  • Course
  • 41 Lessons

The first and only neuroimaging analysis course in Arabic, given by Dr. Ahmed Negida, explains a much-needed skill for neuroscience research, the basics, and the methods of analyzing MRI images. All lectures include practical applications using the existing online datasets.

About the instructor

Ahmed Negida

MBBCh, PhD

Dr. Negida is a research scientist with diverse experience in clinical research and a focus on improving the treatment of neurological and neurosurgical diseases.

Education:
  • MBBCh from Zagazig University, Egypt
  • Ph.D. by Publication from the University of Portsmouth, UK

Research Fellowships:
  • Bahcesehir University (Turkey)
  • Harvard Medical School, MA (USA)
  • Virginia Commonwealth University, VA (USA)

Course Announcemenet

Contents

Preparation information - Lecture 1

[JOIN NOW] Telegram Group of the Course
    Course Timeline
      Lecture 1: Basics of Neuroimaging Analysis
        Recommended Requirements
        • 111 KB
        MATLAB System Requirements
          (OPTIONAL): Buying MATLAB
            (WAIT) MATLAB - 30 day free trial
              Download the SPM12
                Assignment 1

                  Section 1: Introduction & Basics

                  Introduction to MATLAB graphical user interface
                    Basic MATLAB commands
                      Introduction to Neuroimaging with MRI
                        Factors Affecting Imaging Quality
                          File Formats
                            Converting DICOM to Nifti
                              Organizing MRI data

                                Section 2: Preprocessing of MRI

                                Introduction to preprocessing
                                  Realignment and Motion Correction
                                    Coregistration
                                      Spatial Normalization
                                        Smoothing
                                          Summary of preprocessing
                                            Introduction & preprocessing.mp4
                                            • 19 mins
                                            • 93.5 MB
                                            Preprocessing on SPM 12 & Segmentation on CAT12.mp4
                                            • (1h 01m 45s)
                                            • 280 MB
                                            Discussion After VBM & Quality Checks.mp4
                                            • 54 mins
                                            • 315 MB

                                            Analysis of Structural MRI images

                                            Download CAT12 Toolbox
                                              Download SPM Neuroanatomy Toolbox version 3.0 (JuBrain)
                                                Terminal Codes to Bypass MacOS security
                                                  Lecture 2: Analysis of Voxel-based Morphometry
                                                    Lecture 3: Measurement of Cortical Thickness & More Practice on the VBM

                                                      Analysis of Functional MRI images

                                                      Download Conn Toolbox
                                                        Analysis of resting state fMRI - First Level Analysis
                                                        • (2h 33m 28s)
                                                        • 714 MB
                                                        Analysis of resting-state fMRI - second level analysis (group analysis)
                                                        • (1h 45m 19s)
                                                        • 2.47 GB
                                                        Lecture 4: Analysis of BOLD Signal - Part 1
                                                          Lecture 5: Analysis of BOLD Signal - Part 2
                                                            Case Study - Example for a complete fMRI analysis of a clinical trial
                                                            • 29 mins
                                                            • 648 MB

                                                            Additional Resources

                                                            Lecture 6: Revision and Q&A
                                                              Other Alternative (less powerful) Neuroimaging Analysis Software
                                                                MATLAB script to calculate the Grey Matter Density using the weighted sum method
                                                                • 1.56 KB

                                                                FLAIR MRI analysis

                                                                Lesion Segmentation Tool
                                                                  Counting the Number of WMHs and Total Lesion Volume
                                                                  • 20 mins
                                                                  • 313 MB